# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "ipADMIXTURE" in publications use:'
type: software
license: GPL-3.0-only
title: 'ipADMIXTURE: Iterative Pruning Population Admixture Inference Framework'
version: 0.1.2
doi: 10.1101/2020.03.21.001206
identifiers:
- type: doi
  value: 10.32614/CRAN.package.ipADMIXTURE
abstract: A data clustering package based on admixture ratios (Q matrix) of population
  structure. The framework is based on iterative Pruning procedure that performs data
  clustering by splitting a given population into subclusters until meeting the condition
  of stopping criteria the same as ipPCA, iNJclust, and IPCAPS frameworks. The package
  also provides a function to retrieve phylogeny tree that construct a neighbor-joining
  tree based on a similar matrix between clusters. By given multiple Q matrices with
  varying a number of ancestors (K), the framework define a similar value between
  clusters i,j as a minimum number K* that makes majority of members of two clusters
  are in the different clusters. This K* reflexes a minimum number of ancestors we
  need to splitting cluster i,j into different clusters if we assign K* clusters based
  on maximum admixture ratio of individuals. The publication of this package is at
  Chainarong Amornbunchornvej, Pongsakorn Wangkumhang, and Sissades Tongsima (2020)
  <https://doi.org/10.1101/2020.03.21.001206>.
authors:
- family-names: Amornbunchornvej
  given-names: Chainarong
  email: grandca@gmail.com
  orcid: https://orcid.org/0000-0003-3131-0370
preferred-citation:
  type: generic
  title: 'ipADMIXTURE: R package for inferring sub-population clusters based on genetic
    admixture'
  authors:
  - family-names: Amornbunchornvej
    given-names: Chainarong
    email: grandca@gmail.com
    orcid: https://orcid.org/0000-0003-3131-0370
  - family-names: Wangkumhang
    given-names: Pongsakorn
  - family-names: Tongsima
    given-names: Sissades
  year: '2020'
  url: https://doi.org/10.1101/2020.03.21.001206
  doi: 10.1101/2020.03.21.001206
repository: https://darkeyes.r-universe.dev
repository-code: https://github.com/DarkEyes/ipADMIXTURE
commit: efcc3b14913a753e0ef01d8babaac79646634c5a
url: https://github.com/DarkEyes/ipADMIXTURE
date-released: '2025-05-07'
contact:
- family-names: Amornbunchornvej
  given-names: Chainarong
  email: grandca@gmail.com
  orcid: https://orcid.org/0000-0003-3131-0370