Package: ipADMIXTURE Title: Iterative Pruning Population Admixture Inference Framework Version: 0.1.2 Authors@R: person(given = "Chainarong", family = "Amornbunchornvej", role = c("aut", "cre"), email = "grandca@gmail.com", comment = c(ORCID = "0000-0003-3131-0370")) Description: A data clustering package based on admixture ratios (Q matrix) of population structure. The framework is based on iterative Pruning procedure that performs data clustering by splitting a given population into subclusters until meeting the condition of stopping criteria the same as ipPCA, iNJclust, and IPCAPS frameworks. The package also provides a function to retrieve phylogeny tree that construct a neighbor-joining tree based on a similar matrix between clusters. By given multiple Q matrices with varying a number of ancestors (K), the framework define a similar value between clusters i,j as a minimum number K* that makes majority of members of two clusters are in the different clusters. This K* reflexes a minimum number of ancestors we need to splitting cluster i,j into different clusters if we assign K* clusters based on maximum admixture ratio of individuals. The publication of this package is at Chainarong Amornbunchornvej, Pongsakorn Wangkumhang, and Sissades Tongsima (2020) . Depends: R (>= 3.5.0) Imports: stats,treemap,ape URL: https://github.com/DarkEyes/ipADMIXTURE BugReports: https://github.com/DarkEyes/ipADMIXTURE/issues Language: en-US License: GPL-3 Encoding: UTF-8 LazyData: true Suggests: knitr, rmarkdown VignetteBuilder: knitr RoxygenNote: 7.3.2 Config/pak/sysreqs: cmake libglpk-dev make libuv1-dev libxml2-dev zlib1g-dev Repository: https://darkeyes.r-universe.dev Date/Publication: 2025-05-07 09:27:19 UTC RemoteUrl: https://github.com/darkeyes/ipadmixture RemoteRef: HEAD RemoteSha: efcc3b14913a753e0ef01d8babaac79646634c5a NeedsCompilation: no Packaged: 2026-07-02 07:18:42 UTC; root Author: Chainarong Amornbunchornvej [aut, cre] (ORCID: ) Maintainer: Chainarong Amornbunchornvej